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SCaVis manual

Graphical canvases

Every data container of SCaVis can either be

  • plottable (extends the class Plottable and can be shown on the canvaces.
  • not plottable, i.e. represent pure data. Almost all non-plottable objects they can be converted to plottable objects

You can check if the object is plottable if it implements the method is3D (it is 3D object or 2D). Here is the example:

>>from jhplot import *
>>p=P1D()
>>print p.is3D()

It returns false (not a 3D object), i.e. it belongs to objects which can only plotted on 2D canvaces.

>>from jhplot import *
>>p=PND() # 2D array
>>print p.is3D()

You will see the error “AttributeError: 'jhplot.PND' object has no attribute 'is3D'.

Plottable objects can be shown on canvaces. Below we summarize the SCaVis canvases which can be used to display data, functions and other graphical objects (axes, labels, keys, arrows) using Java/Jython:

Canvas Description
Plot Plot data and functions using MatLab syntax. Can be used to plot X-Y array,P1D,F1D.
HPlot 2D canvas and contour plots for H1D, P1D, F1D objects and other graphical primitives. H2D can be shown as a desity plot.
HPlotter a similar 2D canvas but has a different look and feel since originate from the JAS (FreeHEP). It has also support for H1D, P1D, F1D. H2D can be shown as a density plot or contour plots (several styles). Plot regions are more interactive than for the HPlot class and there is a better integration with Jaida/FreeHEP libraries
HPlotJas 2D canvas based on Jas2. Accepts H1D, P1D, F1D. H2D for plotting. Useful for interactive rebinning of 1d array and interactive non-linear regression (fits)
HPlotJa 2D canvas with interactive editor for drawing diagrams. It has also support for H1D, P1D, F1D as well as for graphical primitives and Feynman diagrams
HPlotXY 2D canvas with interactive editor for drawing diagrams. It has also support for H1D, P1D, F1D. Plots can have separate pads
SPlot a light-weight 2D canvas with a support for H1D, P1D, F1D as well as for the standard Java arrays
WPlot canvas based on Waterloo with support for H1D, P1D, F1D. Plots can be done as bars, scatter, lines, dots. Polar coordinates are supported.
HPlot2D is used for contour (or density) plots in 2D for classes H2D, P2D, F2D
HPlot3D is used for plotting data in 3D H2D, P3D, F2D
HPlotXYZ is used for plotting data and geometrical objects in 3D using OpenGL. Can be used to show H2D, P3D, F2D
HPlot3DP is used for plotting parametric and non-parametric functions such as FPR
HPlotMX for plotting parametric and non-parametric functions
HChart is used for showing 2D and 3D charts, lines, functions, histograms. Also has a support for P1D and H1D histograms. This canvas supported by the Android version of SCaVis (see this section).
HGraph is used for showing interconnected graphs.
HPlotRT to show data in real time as traces
HZirkel is used for interactive geometry (see this topic)

In addition, one can use several external libraries for plotting data:

Library Description
JFreeChart To plot data and charts
Waterloo scientific library To plot data in chart using interactive canvaces

Such large number of canvases is mainly due to the fact that they are designed for somewhat different tasks and originate from different packages. But the good thing is that thy often share same methods and constructors, so changing the style of the plots can be simply done by replacing the constructor keeping the same plotting methods.

General features

Despite the large number of supported canvaces, all methods used to create interactive plots are rather similar. For most examples to be discussed, we will use the HPlot canvas, but very similar methods also can be used for HPlotter, HPlotJa etc. canvases.

Typically, you can build a canvas like this:

from jhplot *
c1 = HPlot("Canvas",600,400,2,1) # canvas size 600x400, 2 plot regions
c1.visible()         # make it visible
c1.setAutoRange()    # autorange for X
c1.draw(object1)     # draw object1 (H1D,F1D,P1D etc)
c1.draw(object2)     # draw a new object
c1.export("figure.pdf") # export to PDF file

This code create a canvas with the size 600×400 (in pixels), it has 2 pads to show data. The method visible() makes the canvas visible. If you do not want the pop-up image, just call “visible(False)”. Then you can draw any mathematical object or data. Then you can export the image to vector format. Now you are ready to plot functions, histograms and datasets. See documentation of jhplot.HPlot class. It should be noted the HPlot canvas can be replaced by any other canvas described above.

The example also creates image “figure.pdf”. Please read Exporting Canvases section.

Several plots regions

These canvases can be used to show several pads (plot regions) with plotted objects. Specify the number of divisions in X and Y in the constructors. The navigate to a specific plot region using the method “cd()”. Here is example of how to create 2×2 pads on a single canvas:

Code example

  Download for this example is disabled for non-members
 1: from jhplot  import *
 2:
 3: c1 = HPlot("Canvas",500,400,2,2)
 4: c1.visible()
 5: c1. setRangeAll(0,10,0,10)
 6: h1 = P1D("Simple")
 7:
 8: c1.cd(1,1);
 9: h1.add(5,6);  c1.draw(h1)
10:
11: c1.cd(1,2);
12: h1.add(4,3); c1.draw(h1)
13:
14: c1.cd(2,1);
15: h1.add(3,3); c1.draw(h1)
16:
17: c1.cd(2,2);
18: h1.add(2,1); c1.draw(h1)
19: c1.export ("example.pdf")

This works for HPlot, HPlotJa, HPlot3D and many other pads.

Here we use the same X and Y ranges. One can use “setAutoRange()” (after each “cd()”) method to set autorange for each pad. Also, try “setRange(xmin,xmax,ymin,ymax)” to set fixed ranges for each pads. it shows 4 pads with data points.

The plots are fully customizable, i.e. one can change any attribute (axis, label, ticks, ticks label). Read the section plot_styles about how to change various attributes and make different presentation styles.

Exporting to images

When functions, data_structures, histograms or diagrams are shown, one can create an image using the menu [File]-[Export]. One can also save image in a file using the method “export” to a variety of vector graphics formats as well as bitmap image formats.

In the example below, we save an instance of the HPlot class to a PDF file:

>>> c1.export('image.pdf')

we export drawings on the canvas HPlot (c1 represents its instance) into a PDF file. One can also export it into SVG, PNG, JPEG, EPS, PS etc. formats using the appropriate extension for the output file name.

As example, simply append the statement “c1.export('image.ps')” at the end of code snippets shown in sections functions, data_structures, histograms or diagrams, and your image will be saved to a PostScript file “image.ps”.

Images can be generated in a background (without a pop-up frame with the canvas). For this, use the method “c1.visible(0)”, where “0” means Java false.

Please read exporting canvases section for more information how to deal with high-quality images for publications.

Sergei Chekanov 2010/03/07 17:38

man/visual/graphics.txt · Last modified: 2014/12/06 17:14 by admin
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