edu.rit.compbio.phyl

Package edu.rit.compbio.phyl

Package edu.rit.compbio.phyl contains parallel programs for phylogenetic tree construction.

See: Description

Package edu.rit.compbio.phyl Description

Package edu.rit.compbio.phyl contains parallel programs for phylogenetic tree construction. For further information, see:

  • J. Felsenstein. Inferring Phylogenies. Sinauer Associates, 2004.

The following program constructs a phylogenetic tree of DNA sequences using the Unweighted Pair Group Method with Arithmetic mean (UPGMA) algorithm:

The following program constructs maximum parsimony phylogenetic trees of DNA sequences using exhaustive search:

The following programs construct maximum parsimony phylogenetic trees of DNA sequences using branch-and-bound search:

The following program draws a picture of a phylogenetic tree:

The other classes are used by the above programs.

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